Computational Systems Biology of Cancer - Project

Course objectives

  • Practice of single-cell omics data analysis

  • Installation of software, debugging, reproduction of some key published results

  • Semi-autonomous training, close to the laboratory situation

  • Continuous tutoring, target results to be defined together

  • Team work self-organisation, regular progress presentations

  • Emphasis on reproducibility, through the use of electronic notebooks
    (Jupiter or R MarkDown)

Assessment (6 ECTS)

  • The evaluation of the projects is based on the production of a computational notebook (in python and/or R) and on an oral presentation and discussion at the end of the last week.

Schedule

  • Monday Sept 29: Nexflow training (BDD Curie)
  • Tuesday Sept 30, all day: scanpy, CellPie, CausalCCC tutorials  (IBENS 313)
  • Wednesday Oct 1 morning: project work (IBENS 049)
  • Wednesday Oct 2 afternoon: project meeting (IBENS  049)
  • Thursday Oct 2 morning: project work (IBENS 049)
  • Thursday Oct 2 afternoon: project work (IBENS 313)
  • Friday Oct 3 afternoon : project meeting (IBENS 313)
  • Friday Oct 3 afternoon: project work (IBENS 313)
  • Monday Oct 6 all day : project work (IBENS 321)
  • Tuesday Oct 7 morning: Project meeting (IBENS 321)
  • Tuesday Oct 7 afternoon: Project work (IBENS 321)
  • Wednesday Oct 8 : project work (IBENS 321)
  • Thursday Oct 9 morning: project meeting (IBENS 321)
  • Thursday Oct 9 afternoon: project work (IBENS 321)
  • Friday Oct 10 afternoon: project work (IBENS 321)
  • Friday Oct 10 afternoon : project presentations (IBENS 321)